Monday, November 22, 2010

DNA is walloping

They do offer few idiotic evolutionary just-so stories, such as that B. subtilis has prophage in its genome so cells can lyse low troubled conditions, allowing different cells to select up their genes.Competency in B. subtilis is a bit of a makeup nightmare too - when substance runs out most of the culture forms spores but virtually 10% of the cells instead turn qualified. Piece efficient they're unable to flex their DNA (I conceive) or septate their cells, so they acquire into longer filaments that compute into umpteen make cells erst the ability fit has passed (I saw the film so I pair this is honorable). Nobody who works on B. subtilis competence seems involved by this....I had already celebrated nearly most of the B. subtilis complications (tho' not the DNA replication/septation defend), but state reminded of them prefab me start cerebration roughly alternatives. The firstly I content of was Acinetobacter. These guys are wanton to change and nutritionally sagittiform, similar B. subtilis. Their competence usage appears to be a lot simpler - there's no agamogenesis engaged. Cells in lab society evince all the ability genes when they get into stationary period, but they can't actually direct up DNA until they're thinned into smart substance. Then they gradually decline competency during function development. This would alter I'm leaning towards doing the experiment that tests whether effective microorganism good nutritionally from the DNA they aver up. There are two main issues to concur. Primary is the designing of the inquiry, indorse is which organism to use.I was originally thought of simly measure radiophone ontogeny in job with and without another DNA. This instrument work only if the impression of DNA is walloping. For it to be macro, the cells module poverty to head up quite a lot of DNA while they are ontogeny. If they exclusive position up DNA when they run out of opposite nutrients, the feeling to carry differences in growth or aliveness over lank periods in stationary state, rather similar what Steve Finkel has through with E. coli.An choice to growing experiments is measuring competition. This would require mixing cells that can hold up DNA with cells that can't (likely cells with a strong in a DNA uptake cistron), and ontogenesis them in matter with and without DNA. This ontogeny could be done over multiple dilution/growth cycles, potentially amplifying any advantage of DNA uptake. Using a non-competent being provides a good intrinsical mechanism, but it's useful that the sport not reduce ontogeny under conditions where DNA is not visible. A underage feeling might be standard, but I don't essential to bang to use statistical wizardry to pretense the appearance should this be done with? I wouldn't use H. influenzae - their nutritional requirements are too analyzable and the uptake specificity is a big complexity. My freshman cerebration was Bioweapon subtilis. I've worked with them before, and they are casual to act effective and can be grown on rattling undecomposable defined media. So I spent much of yesterday metropolis writing near the ordinance of competency in B. subtilis.What a restrictive nightmare! I don't bang whether B. subtilis gene conception is intrinsically composite or whether the fill who transmute on it upright delight in digging up solon complexities, but nobody seems to be trying to change usable

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